Bioconductor Multiple testing correction

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IHW multiple testing correction covariate distribution

updated 6.2 years ago by Wolfgang Huber ★ 13k • written 6.2 years ago by lara.h.urban • 0

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qvalue pvalue histogram multiple testing correction

updated 6.6 years ago by Nikos Ignatiadis ▴ 180 • written 6.6 years ago by oliver.selmoni ▴ 10

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limma limma voom limma contrast matrix multiple testing correction

updated 7.9 years ago by James W. MacDonald 67k • written 7.9 years ago by gregory.l.stone ▴ 10

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betr multiple testing correction

8.5 years ago moradzadeh_k921 • 0

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edgeR glmLRT() multiple factor design multiple testing correction

updated 10.0 years ago by Aaron Lun ★ 28k • written 10.0 years ago by Ekarl2 ▴ 80

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Comment: EdgeR Biological CVs by ATpoint ★ 4.6k

"Joseph" is a spam bot...

Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k

GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…

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How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

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